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| <?php//// +----------------------------------------------------------------------+// | PHP Version 4                                                        |// +----------------------------------------------------------------------+// | Copyright (c) 1997-2003 The PHP Group                                |// +----------------------------------------------------------------------+// | This source file is subject to version 2.0 of the PHP license,       |// | that is bundled with this package in the file LICENSE, and is        |// | available at through the world-wide-web at                           |// | http://www.php.net/license/2_02.txt.                                 |// | If you did not receive a copy of the PHP license and are unable to   |// | obtain it through the world-wide-web, please send a note to          |// | license@php.net so we can mail you a copy immediately.               |// +----------------------------------------------------------------------+// | Authors: Jesus M. Castagnetto <jmcastagnetto@php.net>                |// +----------------------------------------------------------------------+//// $Id: Stats.php,v 1.15 2003/06/01 11:40:30 jmcastagnetto Exp $//include_once 'PEAR.php';/*** @package Math_Stats*/// Constants for defining the statistics to calculate /*{{{*//*** STATS_BASIC to generate the basic descriptive statistics*/define('STATS_BASIC', 1);/*** STATS_FULL to generate also higher moments, mode, median, etc.*/define('STATS_FULL', 2);/*}}}*/// Constants describing the data set format /*{{{*//*** STATS_DATA_SIMPLE for an array of numeric values. This is the default.* e.g. $data = array(2,3,4,5,1,1,6);*/define('STATS_DATA_SIMPLE', 0);/*** STATS_DATA_CUMMULATIVE for an associative array of frequency values,* where in each array entry, the index is the data point and the* value the count (frequency):* e.g. $data = array(3=>4, 2.3=>5, 1.25=>6, 0.5=>3)*/define('STATS_DATA_CUMMULATIVE', 1);/*}}}*/// Constants defining how to handle nulls /*{{{*//*** STATS_REJECT_NULL, reject data sets with null values. This is the default.* Any non-numeric value is considered a null in this context.*/define('STATS_REJECT_NULL', -1);/*** STATS_IGNORE_NULL, ignore null values and prune them from the data.* Any non-numeric value is considered a null in this context.*/define('STATS_IGNORE_NULL', -2);/*** STATS_USE_NULL_AS_ZERO, assign the value of 0 (zero) to null values.* Any non-numeric value is considered a null in this context.*/define('STATS_USE_NULL_AS_ZERO', -3);/*}}}*//*** A class to calculate descriptive statistics from a data set.* Data sets can be simple arrays of data, or a cummulative hash.* The second form is useful when passing large data set,* for example the data set:** <pre>* $data1 = array (1,2,1,1,1,1,3,3,4.1,3,2,2,4.1,1,1,2,3,3,2,2,1,1,2,2);* </pre>** can be epxressed more compactly as:** <pre>* $data2 = array('1'=>9, '2'=>8, '3'=>5, '4.1'=>2);* </pre>** Example of use:** <pre>* include_once 'Math/Stats.php';* $s = new Math_Stats();* $s->setData($data1);* // or* // $s->setData($data2, STATS_DATA_CUMMULATIVE);* $stats = $s->calcBasic();* echo 'Mean: '.$stats['mean'].' StDev: '.$stats['stdev'].' <br />\n';** // using data with nulls* // first ignoring them:* $data3 = array(1.2, 'foo', 2.4, 3.1, 4.2, 3.2, null, 5.1, 6.2);* $s->setNullOption(STATS_IGNORE_NULL);* $s->setData($data3);* $stats3 = $s->calcFull();** // and then assuming nulls == 0* $s->setNullOption(STATS_USE_NULL_AS_ZERO);* $s->setData($data3);* $stats3 = $s->calcFull();* </pre>** Originally this class was part of NumPHP (Numeric PHP package)** @author  Jesus M. Castagnetto <jmcastagnetto@php.net>* @version 0.8* @access  public* @package Math_Stats*/class Base {/*{{{*/    // properties /*{{{*/    /**     * The simple or cummulative data set.     * Null by default.     *     * @access  private     * @var array     */    public $_data = null;    /**     * Expanded data set. Only set when cummulative data     * is being used. Null by default.     *     * @access  private     * @var array     */    public $_dataExpanded = null;    /**     * Flag for data type, one of STATS_DATA_SIMPLE or     * STATS_DATA_CUMMULATIVE. Null by default.     *     * @access  private     * @var int     */    public $_dataOption = null;    /**     * Flag for null handling options. One of STATS_REJECT_NULL,     * STATS_IGNORE_NULL or STATS_USE_NULL_AS_ZERO     *     * @access  private     * @var int     */    public $_nullOption;    /**     * Array for caching result values, should be reset     * when using setData()     *     * @access private     * @var array     */    public $_calculatedValues = array();    /*}}}*/    /**     * Constructor for the class     *     * @access  public     * @param   optional    int $nullOption how to handle null values     * @return  object  Math_Stats     */    function Math_Stats($nullOption=STATS_REJECT_NULL) {/*{{{*/        $this->_nullOption = $nullOption;    }/*}}}*/    /**     * Sets and verifies the data, checking for nulls and using     * the current null handling option     *     * @access public     * @param   array   $arr    the data set     * @param   optional    int $opt    data format: STATS_DATA_CUMMULATIVE or STATS_DATA_SIMPLE (default)     * @return  mixed   true on success, a PEAR_Error object otherwise     */    function setData($arr, $opt=STATS_DATA_SIMPLE) {/*{{{*/        if (!is_array($arr)) {            return PEAR::raiseError('invalid data, an array of numeric data was expected');        }        $this->_data = null;        $this->_dataExpanded = null;        $this->_dataOption = null;        $this->_calculatedValues = array();        if ($opt == STATS_DATA_SIMPLE) {            $this->_dataOption = $opt;            $this->_data = array_values($arr);        } else if ($opt == STATS_DATA_CUMMULATIVE) {            $this->_dataOption = $opt;            $this->_data = $arr;            $this->_dataExpanded = array();        }        return $this->_validate();    }/*}}}*/    /**     * Returns the data which might have been modified     * according to the current null handling options.     *     * @access  public     * @param boolean $expanded whether to return a expanded list, default is false     * @return  mixed   array of data on success, a PEAR_Error object otherwise     * @see _validate()     */    function getData($expanded=false) {/*{{{*/        if ($this->_data == null) {            return PEAR::raiseError('data has not been set');        }        if ($this->_dataOption == STATS_DATA_CUMMULATIVE && $expanded) {            return $this->_dataExpanded;        } else {            return $this->_data;        }    }/*}}}*/    /**     * Sets the null handling option.     * Must be called before assigning a new data set containing null values     *     * @access  public     * @return  mixed   true on success, a PEAR_Error object otherwise     * @see _validate()     */    function setNullOption($nullOption) {/*{{{*/        if ($nullOption == STATS_REJECT_NULL            || $nullOption == STATS_IGNORE_NULL            || $nullOption == STATS_USE_NULL_AS_ZERO) {            $this->_nullOption = $nullOption;            return true;        } else {            return PEAR::raiseError('invalid null handling option expecting: '.                        'STATS_REJECT_NULL, STATS_IGNORE_NULL or STATS_USE_NULL_AS_ZERO');        }    }/*}}}*/    /**     * Transforms the data by substracting each entry from the mean and     * dividing by its standard deviation. This will reset all pre-calculated     * values to their original (unset) defaults.     *     * @access public     * @return mixed true on success, a PEAR_Error object otherwise     * @see mean()     * @see stDev()     * @see setData()     */    function studentize() {/*{{{*/        $mean = $this->mean();        if (PEAR::isError($mean)) {            return $mean;        }        $std = $this->stDev();        if (PEAR::isError($std)) {            return $std;        }        if ($std == 0) {            return PEAR::raiseError('cannot studentize data, standard deviation is zero.');        }        $arr  = array();        if ($this->_dataOption == STATS_DATA_CUMMULATIVE) {            foreach ($this->_data as $val=>$freq) {                $newval = ($val - $mean) / $std;                $arr["$newval"] = $freq;            }        } else {            foreach ($this->_data as $val) {                $newval = ($val - $mean) / $std;                $arr[] = $newval;            }        }        return $this->setData($arr, $this->_dataOption);    }/*}}}*/    /**     * Transforms the data by substracting each entry from the mean.     * This will reset all pre-calculated values to their original (unset) defaults.     *     * @access public     * @return mixed true on success, a PEAR_Error object otherwise     * @see mean()     * @see setData()     */    function center() {/*{{{*/        $mean = $this->mean();        if (PEAR::isError($mean)) {            return $mean;        }        $arr  = array();        if ($this->_dataOption == STATS_DATA_CUMMULATIVE) {            foreach ($this->_data as $val=>$freq) {                $newval = $val - $mean;                $arr["$newval"] = $freq;            }        } else {            foreach ($this->_data as $val) {                $newval = $val - $mean;                $arr[] = $newval;            }        }        return $this->setData($arr, $this->_dataOption);    }/*}}}*/    /**     * Calculates the basic or full statistics for the data set     *     * @access  public     * @param   int $mode   one of STATS_BASIC or STATS_FULL     * @param boolean $returnErrorObject whether the raw PEAR_Error (when true, default),     *                  or only the error message will be returned (when false), if an error happens.     * @return  mixed   an associative array of statistics on success, a PEAR_Error object otherwise     * @see calcBasic()     * @see calcFull()     */    function calc($mode, $returnErrorObject=true) {/*{{{*/        if ($this->_data == null) {            return PEAR::raiseError('data has not been set');        }        if ($mode == STATS_BASIC) {            return $this->calcBasic($returnErrorObject);        } elseif ($mode == STATS_FULL) {            return $this->calcFull($returnErrorObject);        } else {            return PEAR::raiseError('incorrect mode, expected STATS_BASIC or STATS_FULL');        }    }/*}}}*/    /**     * Calculates a basic set of statistics     *     * @access  public     * @param boolean $returnErrorObject whether the raw PEAR_Error (when true, default),     *                  or only the error message will be returned (when false), if an error happens.     * @return  mixed   an associative array of statistics on success, a PEAR_Error object otherwise     * @see calc()     * @see calcFull()     */    function calcBasic($returnErrorObject=true) {/*{{{*/            return array (                'min' => $this->__format($this->min(), $returnErrorObject),                'max' => $this->__format($this->max(), $returnErrorObject),                'sum' => $this->__format($this->sum(), $returnErrorObject),                'sum2' => $this->__format($this->sum2(), $returnErrorObject),                'count' => $this->__format($this->count(), $returnErrorObject),                'mean' => $this->__format($this->mean(), $returnErrorObject),                'stdev' => $this->__format($this->stDev(), $returnErrorObject),                'variance' => $this->__format($this->variance(), $returnErrorObject),                'range' => $this->__format($this->range(), $returnErrorObject)            );    }/*}}}*/    /**     * Calculates a full set of statistics     *     * @access  public     * @param boolean $returnErrorObject whether the raw PEAR_Error (when true, default),     *                  or only the error message will be returned (when false), if an error happens.     * @return  mixed   an associative array of statistics on success, a PEAR_Error object otherwise     * @see calc()     * @see calcBasic()     */    function calcFull($returnErrorObject=true) {/*{{{*/            return array (                'min' => $this->__format($this->min(), $returnErrorObject),                'max' => $this->__format($this->max(), $returnErrorObject),                'sum' => $this->__format($this->sum(), $returnErrorObject),                'sum2' => $this->__format($this->sum2(), $returnErrorObject),                'count' => $this->__format($this->count(), $returnErrorObject),                'mean' => $this->__format($this->mean(), $returnErrorObject),                'median' => $this->__format($this->median(), $returnErrorObject),                'mode' => $this->__format($this->mode(), $returnErrorObject),                'midrange' => $this->__format($this->midrange(), $returnErrorObject),                'geometric_mean' => $this->__format($this->geometricMean(), $returnErrorObject),                'harmonic_mean' => $this->__format($this->harmonicMean(), $returnErrorObject),                'stdev' => $this->__format($this->stDev(), $returnErrorObject),                'absdev' => $this->__format($this->absDev(), $returnErrorObject),                'variance' => $this->__format($this->variance(), $returnErrorObject),                'range' => $this->__format($this->range(), $returnErrorObject),                'std_error_of_mean' => $this->__format($this->stdErrorOfMean(), $returnErrorObject),                'skewness' => $this->__format($this->skewness(), $returnErrorObject),                'kurtosis' => $this->__format($this->kurtosis(), $returnErrorObject),                'coeff_of_variation' => $this->__format($this->coeffOfVariation(), $returnErrorObject),                'sample_central_moments' => array (                            1 => $this->__format($this->sampleCentralMoment(1), $returnErrorObject),                            2 => $this->__format($this->sampleCentralMoment(2), $returnErrorObject),                            3 => $this->__format($this->sampleCentralMoment(3), $returnErrorObject),                            4 => $this->__format($this->sampleCentralMoment(4), $returnErrorObject),                            5 => $this->__format($this->sampleCentralMoment(5), $returnErrorObject)                            ),                'sample_raw_moments' => array (                            1 => $this->__format($this->sampleRawMoment(1), $returnErrorObject),                            2 => $this->__format($this->sampleRawMoment(2), $returnErrorObject),                            3 => $this->__format($this->sampleRawMoment(3), $returnErrorObject),                            4 => $this->__format($this->sampleRawMoment(4), $returnErrorObject),                            5 => $this->__format($this->sampleRawMoment(5), $returnErrorObject)                            ),                'frequency' => $this->__format($this->frequency(), $returnErrorObject),                'quartiles' => $this->__format($this->quartiles(), $returnErrorObject),                'interquartile_range' => $this->__format($this->interquartileRange(), $returnErrorObject),                'interquartile_mean' => $this->__format($this->interquartileMean(), $returnErrorObject),                'quartile_deviation' => $this->__format($this->quartileDeviation(), $returnErrorObject),                'quartile_variation_coefficient' => $this->__format($this->quartileVariationCoefficient(), $returnErrorObject),                'quartile_skewness_coefficient' => $this->__format($this->quartileSkewnessCoefficient(), $returnErrorObject)            );    }/*}}}*/    /**     * Calculates the minimum of a data set.     * Handles cummulative data sets correctly     *     * @access  public     * @return  mixed   the minimum value on success, a PEAR_Error object otherwise     * @see calc()     * @see max()     */    function min() {/*{{{*/        if ($this->_data == null) {            return PEAR::raiseError('data has not been set');        }        if (!array_key_exists('min', $this->_calculatedValues)) {            if ($this->_dataOption == STATS_DATA_CUMMULATIVE) {                $min = min(array_keys($this->_data));            } else {                $min = min($this->_data);            }            $this->_calculatedValues['min'] = $min;        }        return $this->_calculatedValues['min'];    }/*}}}*/    /**     * Calculates the maximum of a data set.     * Handles cummulative data sets correctly     *     * @access  public     * @return  mixed   the maximum value on success, a PEAR_Error object otherwise     * @see calc()     * @see min()     */    function max() {/*{{{*/        if ($this->_data == null) {            return PEAR::raiseError('data has not been set');        }        if (!array_key_exists('max', $this->_calculatedValues)) {            if ($this->_dataOption == STATS_DATA_CUMMULATIVE) {                $max = max(array_keys($this->_data));            } else {                $max = max($this->_data);            }            $this->_calculatedValues['max'] = $max;        }        return $this->_calculatedValues['max'];    }/*}}}*/    /**     * Calculates SUM { xi }     * Handles cummulative data sets correctly     *     * @access  public     * @return  mixed   the sum on success, a PEAR_Error object otherwise     * @see calc()     * @see sum2()     * @see sumN()     */    function sum() {/*{{{*/        if (!array_key_exists('sum', $this->_calculatedValues)) {            $sum = $this->sumN(1);            if (PEAR::isError($sum)) {                return $sum;            } else {                $this->_calculatedValues['sum'] = $sum;            }        }        return $this->_calculatedValues['sum'];    }/*}}}*/    /**     * Calculates SUM { (xi)^2 }     * Handles cummulative data sets correctly     *     * @access  public     * @return  mixed   the sum on success, a PEAR_Error object otherwise     * @see calc()     * @see sum()     * @see sumN()     */    function sum2() {/*{{{*/        if (!array_key_exists('sum2', $this->_calculatedValues)) {            $sum2 = $this->sumN(2);            if (PEAR::isError($sum2)) {                return $sum2;            } else {                $this->_calculatedValues['sum2'] = $sum2;            }        }        return $this->_calculatedValues['sum2'];    }/*}}}*/    /**     * Calculates SUM { (xi)^n }     * Handles cummulative data sets correctly     *     * @access  public     * @param   numeric $n  the exponent     * @return  mixed   the sum on success, a PEAR_Error object otherwise     * @see calc()     * @see sum()     * @see sum2()     */    function sumN($n) {/*{{{*/        if ($this->_data == null) {            return PEAR::raiseError('data has not been set');        }        $sumN = 0;        if ($this->_dataOption == STATS_DATA_CUMMULATIVE) {            foreach($this->_data as $val=>$freq) {                $sumN += $freq * pow((double)$val, (double)$n);            }        } else {            foreach($this->_data as $val) {                $sumN += pow((double)$val, (double)$n);            }        }        return $sumN;    }/*}}}*/    /**     * Calculates PROD { (xi) }, (the product of all observations)     * Handles cummulative data sets correctly     *     * @access  public     * @return  mixed   the product on success, a PEAR_Error object otherwise     * @see productN()     */    function product() {/*{{{*/        if (!array_key_exists('product', $this->_calculatedValues)) {            $product = $this->productN(1);            if (PEAR::isError($product)) {                return $product;            } else {                $this->_calculatedValues['product'] = $product;            }        }        return $this->_calculatedValues['product'];    }/*}}}*/    /**     * Calculates PROD { (xi)^n }, which is the product of all observations     * Handles cummulative data sets correctly     *     * @access  public     * @param   numeric $n  the exponent     * @return  mixed   the product on success, a PEAR_Error object otherwise     * @see product()     */    function productN($n) {/*{{{*/        if ($this->_data == null) {            return PEAR::raiseError('data has not been set');        }        $prodN = 1.0;        if ($this->_dataOption == STATS_DATA_CUMMULATIVE) {            foreach($this->_data as $val=>$freq) {                if ($val == 0) {                    return 0.0;                }                $prodN *= $freq * pow((double)$val, (double)$n);            }        } else {            foreach($this->_data as $val) {                if ($val == 0) {                    return 0.0;                }                $prodN *= pow((double)$val, (double)$n);            }        }        return $prodN;    }/*}}}*/    /**     * Calculates the number of data points in the set     * Handles cummulative data sets correctly     *     * @access  public     * @return  mixed   the count on success, a PEAR_Error object otherwise     * @see calc()     */    function count() {/*{{{*/        if ($this->_data == null) {            return PEAR::raiseError('data has not been set');        }        if (!array_key_exists('count', $this->_calculatedValues)) {            if ($this->_dataOption == STATS_DATA_CUMMULATIVE) {                $count = count($this->_dataExpanded);            } else {                $count = count($this->_data);            }            $this->_calculatedValues['count'] = $count;        }        return $this->_calculatedValues['count'];    }/*}}}*/    /**     * Calculates the mean (average) of the data points in the set     * Handles cummulative data sets correctly     *     * @access  public     * @return  mixed   the mean value on success, a PEAR_Error object otherwise     * @see calc()     * @see sum()     * @see count()     */    function mean() {/*{{{*/        if (!array_key_exists('mean', $this->_calculatedValues)) {            $sum = $this->sum();            if (PEAR::isError($sum)) {                return $sum;            }            $count = $this->count();            if (PEAR::isError($count)) {                return $count;            }            $this->_calculatedValues['mean'] = $sum / $count;        }        return $this->_calculatedValues['mean'];    }/*}}}*/    /**     * Calculates the range of the data set = max - min     *     * @access public     * @return mixed the value of the range on success, a PEAR_Error object otherwise.     */    function range() {/*{{{*/        if (!array_key_exists('range', $this->_calculatedValues)) {            $min = $this->min();            if (PEAR::isError($min)) {                return $min;            }            $max = $this->max();            if (PEAR::isError($max)) {                return $max;            }            $this->_calculatedValues['range'] = $max - $min;        }        return $this->_calculatedValues['range'];    }/*}}}*/    /**     * Calculates the variance (unbiased) of the data points in the set     * Handles cummulative data sets correctly     *     * @access  public     * @return  mixed   the variance value on success, a PEAR_Error object otherwise     * @see calc()     * @see __sumdiff()     * @see count()     */    function variance() {/*{{{*/        if (!array_key_exists('variance', $this->_calculatedValues)) {            $variance = $this->__calcVariance();            if (PEAR::isError($variance)) {                return $variance;            }            $this->_calculatedValues['variance'] = $variance;        }        return $this->_calculatedValues['variance'];    }/*}}}*/    /**     * Calculates the standard deviation (unbiased) of the data points in the set     * Handles cummulative data sets correctly     *     * @access  public     * @return  mixed   the standard deviation on success, a PEAR_Error object otherwise     * @see calc()     * @see variance()     */    function stDev() {/*{{{*/        if (!array_key_exists('stDev', $this->_calculatedValues)) {            $variance = $this->variance();            if (PEAR::isError($variance)) {                return $variance;            }            $this->_calculatedValues['stDev'] = sqrt($variance);        }        return $this->_calculatedValues['stDev'];    }/*}}}*/    /**     * Calculates the variance (unbiased) of the data points in the set     * given a fixed mean (average) value. Not used in calcBasic(), calcFull()     * or calc().     * Handles cummulative data sets correctly     *     * @access  public     * @param   numeric $mean   the fixed mean value     * @return  mixed   the variance on success, a PEAR_Error object otherwise     * @see __sumdiff()     * @see count()     * @see variance()     */    function varianceWithMean($mean) {/*{{{*/        return $this->__calcVariance($mean);    }/*}}}*/    /**     * Calculates the standard deviation (unbiased) of the data points in the set     * given a fixed mean (average) value. Not used in calcBasic(), calcFull()     * or calc().     * Handles cummulative data sets correctly     *     * @access  public     * @param   numeric $mean   the fixed mean value     * @return  mixed   the standard deviation on success, a PEAR_Error object otherwise     * @see varianceWithMean()     * @see stDev()     */    function stDevWithMean($mean) {/*{{{*/        $varianceWM = $this->varianceWithMean($mean);        if (PEAR::isError($varianceWM)) {            return $varianceWM;        }        return sqrt($varianceWM);    }/*}}}*/    /**     * Calculates the absolute deviation of the data points in the set     * Handles cummulative data sets correctly     *     * @access  public     * @return  mixed   the absolute deviation on success, a PEAR_Error object otherwise     * @see calc()     * @see __sumabsdev()     * @see count()     * @see absDevWithMean()     */    function absDev() {/*{{{*/        if (!array_key_exists('absDev', $this->_calculatedValues)) {            $absDev = $this->__calcAbsoluteDeviation();            if (PEAR::isError($absdev)) {                return $absdev;            }            $this->_calculatedValues['absDev'] = $absDev;        }        return $this->_calculatedValues['absDev'];    }/*}}}*/    /**     * Calculates the absolute deviation of the data points in the set     * given a fixed mean (average) value. Not used in calcBasic(), calcFull()     * or calc().     * Handles cummulative data sets correctly     *     * @access  public     * @param   numeric $mean   the fixed mean value     * @return  mixed   the absolute deviation on success, a PEAR_Error object otherwise     * @see __sumabsdev()     * @see absDev()     */    function absDevWithMean($mean) {/*{{{*/        return $this->__calcAbsoluteDeviation($mean);    }/*}}}*/    /**     * Calculates the skewness of the data distribution in the set     * The skewness measures the degree of asymmetry of a distribution,     * and is related to the third central moment of a distribution.     * A normal distribution has a skewness = 0     * A distribution with a tail off towards the high end of the scale     * (positive skew) has a skewness > 0     * A distribution with a tail off towards the low end of the scale     * (negative skew) has a skewness < 0     * Handles cummulative data sets correctly     *     * @access  public     * @return  mixed   the skewness value on success, a PEAR_Error object otherwise     * @see __sumdiff()     * @see count()     * @see stDev()     * @see calc()     */    function skewness() {/*{{{*/        if (!array_key_exists('skewness', $this->_calculatedValues)) {            $count = $this->count();            if (PEAR::isError($count)) {                return $count;            }            $stDev = $this->stDev();            if (PEAR::isError($stDev)) {                return $stDev;            }            $sumdiff3 = $this->__sumdiff(3);            if (PEAR::isError($sumdiff3)) {                return $sumdiff3;            }            $this->_calculatedValues['skewness'] = ($sumdiff3 / ($count * pow($stDev, 3)));        }        return $this->_calculatedValues['skewness'];    }/*}}}*/    /**     * Calculates the kurtosis of the data distribution in the set     * The kurtosis measures the degrees of peakedness of a distribution.     * It is also called the "excess" or "excess coefficient", and is     * a normalized form of the fourth central moment of a distribution.     * A normal distributions has kurtosis = 0     * A narrow and peaked (leptokurtic) distribution has a     * kurtosis > 0     * A flat and wide (platykurtic) distribution has a kurtosis < 0     * Handles cummulative data sets correctly     *     * @access  public     * @return  mixed   the kurtosis value on success, a PEAR_Error object otherwise     * @see __sumdiff()     * @see count()     * @see stDev()     * @see calc()     */    function kurtosis() {/*{{{*/        if (!array_key_exists('kurtosis', $this->_calculatedValues)) {            $count = $this->count();            if (PEAR::isError($count)) {                return $count;            }            $stDev = $this->stDev();            if (PEAR::isError($stDev)) {                return $stDev;            }            $sumdiff4 = $this->__sumdiff(4);            if (PEAR::isError($sumdiff4)) {                return $sumdiff4;            }            $this->_calculatedValues['kurtosis'] = ($sumdiff4 / ($count * pow($stDev, 4))) - 3;        }        return $this->_calculatedValues['kurtosis'];    }/*}}}*/    /**     * Calculates the median of a data set.     * The median is the value such that half of the points are below it     * in a sorted data set.     * If the number of values is odd, it is the middle item.     * If the number of values is even, is the average of the two middle items.     * Handles cummulative data sets correctly     *     * @access  public     * @return  mixed   the median value on success, a PEAR_Error object otherwise     * @see count()     * @see calc()     */    function median() {/*{{{*/        if ($this->_data == null) {            return PEAR::raiseError('data has not been set');        }        if (!array_key_exists('median', $this->_calculatedValues)) {            if ($this->_dataOption == STATS_DATA_CUMMULATIVE) {                $arr =& $this->_dataExpanded;            } else {                $arr =& $this->_data;            }            $n = $this->count();            if (PEAR::isError($n)) {                return $n;            }            $h = intval($n / 2);            if ($n % 2 == 0) {                $median = ($arr[$h] + $arr[$h - 1]) / 2;            } else {                $median = $arr[$h + 1];            }            $this->_calculatedValues['median'] = $median;        }        return $this->_calculatedValues['median'];    }/*}}}*/    /**     * Calculates the mode of a data set.     * The mode is the value with the highest frequency in the data set.     * There can be more than one mode.     * Handles cummulative data sets correctly     *     * @access  public     * @return  mixed   an array of mode value on success, a PEAR_Error object otherwise     * @see frequency()     * @see calc()     */    function mode() {/*{{{*/        if ($this->_data == null) {            return PEAR::raiseError('data has not been set');        }        if (!array_key_exists('mode', $this->_calculatedValues)) {            if ($this->_dataOption == STATS_DATA_CUMMULATIVE) {                $arr = $this->_data;            } else {                $arr = $this->frequency();            }            arsort($arr);            $mcount = 1;            foreach ($arr as $val=>$freq) {                if ($mcount == 1) {                    $mode = array($val);                    $mfreq = $freq;                    ++$mcount;                    continue;                }                if ($mfreq == $freq)                    $mode[] = $val;                if ($mfreq > $freq)                    break;            }            $this->_calculatedValues['mode'] = $mode;        }        return $this->_calculatedValues['mode'];    }/*}}}*/    /**     * Calculates the midrange of a data set.     * The midrange is the average of the minimum and maximum of the data set.     * Handles cummulative data sets correctly     *     * @access  public     * @return  mixed   the midrange value on success, a PEAR_Error object otherwise     * @see min()     * @see max()     * @see calc()     */    function midrange() {/*{{{*/        if (!array_key_exists('midrange', $this->_calculatedValues)) {            $min = $this->min();            if (PEAR::isError($min)) {                return $min;            }            $max = $this->max();            if (PEAR::isError($max)) {                return $max;            }            $this->_calculatedValues['midrange'] = (($max + $min) / 2);        }        return $this->_calculatedValues['midrange'];    }/*}}}*/    /**     * Calculates the geometrical mean of the data points in the set     * Handles cummulative data sets correctly     *     * @access public     * @return mixed the geometrical mean value on success, a PEAR_Error object otherwise     * @see calc()     * @see product()     * @see count()     */    function geometricMean() {/*{{{*/        if (!array_key_exists('geometricMean', $this->_calculatedValues)) {            $count = $this->count();            if (PEAR::isError($count)) {                return $count;            }            $prod = $this->product();            if (PEAR::isError($prod)) {                return $prod;            }            if ($prod == 0.0) {                return 0.0;            }            if ($prod < 0) {                return PEAR::raiseError('The product of the data set is negative, geometric mean undefined.');            }            $this->_calculatedValues['geometricMean'] = pow($prod , 1 / $count);        }        return $this->_calculatedValues['geometricMean'];    }/*}}}*/    /**     * Calculates the harmonic mean of the data points in the set     * Handles cummulative data sets correctly     *     * @access public     * @return mixed the harmonic mean value on success, a PEAR_Error object otherwise     * @see calc()     * @see count()     */    function harmonicMean() {/*{{{*/        if ($this->_data == null) {            return PEAR::raiseError('data has not been set');        }        if (!array_key_exists('harmonicMean', $this->_calculatedValues)) {            $count = $this->count();            if (PEAR::isError($count)) {                return $count;            }            $invsum = 0.0;            if ($this->_dataOption == STATS_DATA_CUMMULATIVE) {                foreach($this->_data as $val=>$freq) {                    if ($val == 0) {                        return PEAR::raiseError('cannot calculate a '.                                'harmonic mean with data values of zero.');                    }                    $invsum += $freq / $val;                }            } else {                foreach($this->_data as $val) {                    if ($val == 0) {                        return PEAR::raiseError('cannot calculate a '.                                'harmonic mean with data values of zero.');                    }                    $invsum += 1 / $val;                }            }            $this->_calculatedValues['harmonicMean'] = $count / $invsum;        }        return $this->_calculatedValues['harmonicMean'];    }/*}}}*/    /**     * Calculates the nth central moment (m{n}) of a data set.     *     * The definition of a sample central moment is:     *     *     m{n} = 1/N * SUM { (xi - avg)^n }     *     * where: N = sample size, avg = sample mean.     *     * @access public     * @param integer $n moment to calculate     * @return mixed the numeric value of the moment on success, PEAR_Error otherwise     */    function sampleCentralMoment($n) {/*{{{*/        if (!is_int($n) || $n < 1) {            return PEAR::isError('moment must be a positive integer >= 1.');        }        if ($n == 1) {            return 0;        }        $count = $this->count();        if (PEAR::isError($count)) {            return $count;        }        if ($count == 0) {            return PEAR::raiseError("Cannot calculate {$n}th sample moment, ".                    'there are zero data entries');        }        $sum = $this->__sumdiff($n);        if (PEAR::isError($sum)) {            return $sum;        }        return ($sum / $count);    }/*}}}*/    /**     * Calculates the nth raw moment (m{n}) of a data set.     *     * The definition of a sample central moment is:     *     *     m{n} = 1/N * SUM { xi^n }     *     * where: N = sample size, avg = sample mean.     *     * @access public     * @param integer $n moment to calculate     * @return mixed the numeric value of the moment on success, PEAR_Error otherwise     */    function sampleRawMoment($n) {/*{{{*/        if (!is_int($n) || $n < 1) {            return PEAR::isError('moment must be a positive integer >= 1.');        }        $count = $this->count();        if (PEAR::isError($count)) {            return $count;        }        if ($count == 0) {            return PEAR::raiseError("Cannot calculate {$n}th raw moment, ".                    'there are zero data entries.');        }        $sum = $this->sumN($n);        if (PEAR::isError($sum)) {            return $sum;        }        return ($sum / $count);    }/*}}}*/    /**     * Calculates the coefficient of variation of a data set.     * The coefficient of variation measures the spread of a set of data     * as a proportion of its mean. It is often expressed as a percentage.     * Handles cummulative data sets correctly     *     * @access  public     * @return  mixed   the coefficient of variation on success, a PEAR_Error object otherwise     * @see stDev()     * @see mean()     * @see calc()     */    function coeffOfVariation() {/*{{{*/        if (!array_key_exists('coeffOfVariation', $this->_calculatedValues)) {            $mean = $this->mean();            if (PEAR::isError($mean)) {                return $mean;            }            if ($mean == 0.0) {                return PEAR::raiseError('cannot calculate the coefficient '.                        'of variation, mean of sample is zero');            }            $stDev = $this->stDev();            if (PEAR::isError($stDev)) {                return $stDev;            }            $this->_calculatedValues['coeffOfVariation'] = $stDev / $mean;        }        return $this->_calculatedValues['coeffOfVariation'];    }/*}}}*/    /**     * Calculates the standard error of the mean.     * It is the standard deviation of the sampling distribution of     * the mean. The formula is:     *     * S.E. Mean = SD / (N)^(1/2)     *     * This formula does not assume a normal distribution, and shows     * that the size of the standard error of the mean is inversely     * proportional to the square root of the sample size.     *     * @access  public     * @return  mixed   the standard error of the mean on success, a PEAR_Error object otherwise     * @see stDev()     * @see count()     * @see calc()     */    function stdErrorOfMean() {/*{{{*/        if (!array_key_exists('stdErrorOfMean', $this->_calculatedValues)) {            $count = $this->count();            if (PEAR::isError($count)) {                return $count;            }            $stDev = $this->stDev();            if (PEAR::isError($stDev)) {                return $stDev;            }            $this->_calculatedValues['stdErrorOfMean'] = $stDev / sqrt($count);        }        return $this->_calculatedValues['stdErrorOfMean'];    }/*}}}*/    /**     * Calculates the value frequency table of a data set.     * Handles cummulative data sets correctly     *     * @access  public     * @return  mixed   an associative array of value=>frequency items on success, a PEAR_Error object otherwise     * @see min()     * @see max()     * @see calc()     */    function frequency() {/*{{{*/        if ($this->_data == null) {            return PEAR::raiseError('data has not been set');        }        if (!array_key_exists('frequency', $this->_calculatedValues)) {            if ($this->_dataOption == STATS_DATA_CUMMULATIVE) {                $freq = $this->_data;            } else {                $freq = array();                foreach ($this->_data as $val) {                    $freq["$val"]++;                }                ksort($freq);            }            $this->_calculatedValues['frequency'] = $freq;        }        return $this->_calculatedValues['frequency'];    }/*}}}*/    /**     * The quartiles are defined as the values that divide a sorted     * data set into four equal-sized subsets, and correspond to the     * 25th, 50th, and 75th percentiles.     *     * @access public     * @return mixed an associative array of quartiles on success, a PEAR_Error otherwise     * @see percentile()     */    function quartiles() {/*{{{*/        if (!array_key_exists('quartiles', $this->_calculatedValues)) {            $q1 = $this->percentile(25);            if (PEAR::isError($q1)) {                return $q1;            }            $q2 = $this->percentile(50);            if (PEAR::isError($q2)) {                return $q2;            }            $q3 = $this->percentile(75);            if (PEAR::isError($q3)) {                return $q3;            }            $this->_calculatedValues['quartiles'] = array (                                        '25' => $q1,                                        '50' => $q2,                                        '75' => $q3                                        );        }        return $this->_calculatedValues['quartiles'];    }/*}}}*/    /**     * The interquartile mean is defined as the mean of the values left     * after discarding the lower 25% and top 25% ranked values, i.e.:     *     *  interquart mean = mean(<P(25),P(75)>)     *     *  where: P = percentile     *     * @todo need to double check the equation     * @access public     * @return mixed a numeric value on success, a PEAR_Error otherwise     * @see quartiles()     */    function interquartileMean() {/*{{{*/        if (!array_key_exists('interquartileMean', $this->_calculatedValues)) {            $quart = $this->quartiles();            if (PEAR::isError($quart)) {                return $quart;            }            $q3 = $quart['75'];            $q1 = $quart['25'];            $sum = 0;            $n = 0;            foreach ($this->getData(true) as $val) {                if ($val >= $q1 && $val <= $q3) {                    $sum += $val;                    ++$n;                }            }            if ($n == 0) {                return PEAR::raiseError('error calculating interquartile mean, '.                                        'empty interquartile range of values.');            }            $this->_calculatedValues['interquartileMean'] = $sum / $n;        }        return $this->_calculatedValues['interquartileMean'];    }/*}}}*/    /**     * The interquartile range is the distance between the 75th and 25th     * percentiles. Basically the range of the middle 50% of the data set,     * and thus is not affected by outliers or extreme values.     *     *  interquart range = P(75) - P(25)     *     *  where: P = percentile     *     * @access public     * @return mixed a numeric value on success, a PEAR_Error otherwise     * @see quartiles()     */    function interquartileRange() {/*{{{*/        if (!array_key_exists('interquartileRange', $this->_calculatedValues)) {            $quart = $this->quartiles();            if (PEAR::isError($quart)) {                return $quart;            }            $q3 = $quart['75'];            $q1 = $quart['25'];            $this->_calculatedValues['interquartileRange'] = $q3 - $q1;        }        return $this->_calculatedValues['interquartileRange'];    }/*}}}*/    /**     * The quartile deviation is half of the interquartile range value     *     *  quart dev = (P(75) - P(25)) / 2     *     *  where: P = percentile     *     * @access public     * @return mixed a numeric value on success, a PEAR_Error otherwise     * @see quartiles()     * @see interquartileRange()     */    function quartileDeviation() {/*{{{*/        if (!array_key_exists('quartileDeviation', $this->_calculatedValues)) {            $iqr = $this->interquartileRange();            if (PEAR::isError($iqr)) {                return $iqr;            }            $this->_calculatedValues['quartileDeviation'] = $iqr / 2;        }        return $this->_calculatedValues['quartileDeviation'];    }/*}}}*/    /**     * The quartile variation coefficient is defines as follows:     *     *  quart var coeff = 100 * (P(75) - P(25)) / (P(75) + P(25))     *     *  where: P = percentile     *     * @todo need to double check the equation     * @access public     * @return mixed a numeric value on success, a PEAR_Error otherwise     * @see quartiles()     */    function quartileVariationCoefficient() {/*{{{*/        if (!array_key_exists('quartileVariationCoefficient', $this->_calculatedValues)) {            $quart = $this->quartiles();            if (PEAR::isError($quart)) {                return $quart;            }            $q3 = $quart['75'];            $q1 = $quart['25'];            $d = $q3 - $q1;            $s = $q3 + $q1;            $this->_calculatedValues['quartileVariationCoefficient'] = 100 * $d / $s;        }        return $this->_calculatedValues['quartileVariationCoefficient'];    }/*}}}*/    /**     * The quartile skewness coefficient (also known as Bowley Skewness),     * is defined as follows:     *     *  quart skewness coeff = (P(25) - 2*P(50) + P(75)) / (P(75) - P(25))     *     *  where: P = percentile     *     * @todo need to double check the equation     * @access public     * @return mixed a numeric value on success, a PEAR_Error otherwise     * @see quartiles()     */    function quartileSkewnessCoefficient() {/*{{{*/        if (!array_key_exists('quartileSkewnessCoefficient', $this->_calculatedValues)) {            $quart = $this->quartiles();            if (PEAR::isError($quart)) {                return $quart;            }            $q3 = $quart['75'];            $q2 = $quart['50'];            $q1 = $quart['25'];            $d = $q3 - 2*$q2 + $q1;            $s = $q3 - $q1;            $this->_calculatedValues['quartileSkewnessCoefficient'] = $d / $s;        }        return $this->_calculatedValues['quartileSkewnessCoefficient'];    }/*}}}*/    /**     * The pth percentile is the value such that p% of the a sorted data set     * is smaller than it, and (100 - p)% of the data is larger.     *     * A quick algorithm to pick the appropriate value from a sorted data     * set is as follows:     *     * - Count the number of values: n     * - Calculate the position of the value in the data list: i = p * (n + 1)     * - if i is an integer, return the data at that position     * - if i < 1, return the minimum of the data set     * - if i > n, return the maximum of the data set     * - otherwise, average the entries at adjacent positions to i     *     * The median is the 50th percentile value.     *     * @todo need to double check generality of the algorithm     *     * @access public     * @param numeric $p the percentile to estimate, e.g. 25 for 25th percentile     * @return mixed a numeric value on success, a PEAR_Error otherwise     * @see quartiles()     * @see median()     */    function percentile($p) {/*{{{*/        $count = $this->count();        if (PEAR::isError($count)) {            return $count;        }        if ($this->_dataOption == STATS_DATA_CUMMULATIVE) {            $data =& $this->_dataExpanded;        } else {            $data =& $this->_data;        }        $obsidx = $p * ($count + 1) / 100;        if (intval($obsidx) == $obsidx) {            return $data[($obsidx - 1)];        } elseif ($obsidx < 1) {            return $data[0];        } elseif ($obsidx > $count) {            return $data[($count - 1)];        } else {            $left = floor($obsidx - 1);            $right = ceil($obsidx - 1);            return ($data[$left] + $data[$right]) / 2;        }    }/*}}}*/    // private methods    /**     * Utility function to calculate: SUM { (xi - mean)^n }     *     * @access private     * @param   numeric $power  the exponent     * @param   optional    double   $mean   the data set mean value     * @return  mixed   the sum on success, a PEAR_Error object otherwise     *     * @see stDev()     * @see variaceWithMean();     * @see skewness();     * @see kurtosis();     */    function __sumdiff($power, $mean=null) {/*{{{*/        if ($this->_data == null) {            return PEAR::raiseError('data has not been set');        }        if (is_null($mean)) {            $mean = $this->mean();            if (PEAR::isError($mean)) {                return $mean;            }        }        $sdiff = 0;        if ($this->_dataOption == STATS_DATA_CUMMULATIVE) {            foreach ($this->_data as $val=>$freq) {                $sdiff += $freq * pow((double)($val - $mean), (double)$power);            }        } else {            foreach ($this->_data as $val)                $sdiff += pow((double)($val - $mean), (double)$power);        }        return $sdiff;    }/*}}}*/    /**     * Utility function to calculate the variance with or without     * a fixed mean     *     * @access private     * @param $mean the fixed mean to use, null as default     * @return mixed a numeric value on success, a PEAR_Error otherwise     * @see variance()     * @see varianceWithMean()     */    function __calcVariance($mean = null) {/*{{{*/        if ($this->_data == null) {            return PEAR::raiseError('data has not been set');        }        $sumdiff2 = $this->__sumdiff(2, $mean);        if (PEAR::isError($sumdiff2)) {            return $sumdiff2;        }        $count = $this->count();        if (PEAR::isError($count)) {            return $count;        }        if ($count == 1) {            return PEAR::raiseError('cannot calculate variance of a singe data point');        }        return  ($sumdiff2 / ($count - 1));    }/*}}}*/    /**     * Utility function to calculate the absolute deviation with or without     * a fixed mean     *     * @access private     * @param $mean the fixed mean to use, null as default     * @return mixed a numeric value on success, a PEAR_Error otherwise     * @see absDev()     * @see absDevWithMean()     */    function __calcAbsoluteDeviation($mean = null) {/*{{{*/        if ($this->_data == null) {            return PEAR::raiseError('data has not been set');        }        $count = $this->count();        if (PEAR::isError($count)) {            return $count;        }        $sumabsdev = $this->__sumabsdev($mean);        if (PEAR::isError($sumabsdev)) {            return $sumabsdev;        }        return $sumabsdev / $count;    }/*}}}*/    /**     * Utility function to calculate: SUM { | xi - mean | }     *     * @access  private     * @param   optional    double   $mean   the mean value for the set or population     * @return  mixed   the sum on success, a PEAR_Error object otherwise     *     * @see absDev()     * @see absDevWithMean()     */    function __sumabsdev($mean=null) {/*{{{*/        if ($this->_data == null) {            return PEAR::raiseError('data has not been set');        }        if (is_null($mean)) {            $mean = $this->mean();        }        $sdev = 0;        if ($this->_dataOption == STATS_DATA_CUMMULATIVE) {            foreach ($this->_data as $val=>$freq) {                $sdev += $freq * abs($val - $mean);            }        } else {            foreach ($this->_data as $val) {                $sdev += abs($val - $mean);            }        }        return $sdev;    }/*}}}*/    /**     * Utility function to format a PEAR_Error to be used by calc(),     * calcBasic() and calcFull()     *     * @access private     * @param mixed $v value to be formatted     * @param boolean $returnErrorObject whether the raw PEAR_Error (when true, default),     *                  or only the error message will be returned (when false)     * @return mixed if the value is a PEAR_Error object, and $useErrorObject     *              is false, then a string with the error message will be returned,     *              otherwise the value will not be modified and returned as passed.     */    function __format($v, $useErrorObject=true) {/*{{{*/        if (PEAR::isError($v) && $useErrorObject == false) {            return $v->getMessage();        } else {            return $v;        }    }/*}}}*/    /**     * Utility function to validate the data and modify it     * according to the current null handling option     *     * @access  private     * @return  mixed true on success, a PEAR_Error object otherwise     *     * @see setData()     */    function _validate() {/*{{{*/        $flag = ($this->_dataOption == STATS_DATA_CUMMULATIVE);        foreach ($this->_data as $key=>$value) {            $d = ($flag) ? $key : $value;            $v = ($flag) ? $value : $key;            if (!is_numeric($d)) {                switch ($this->_nullOption) {                    case STATS_IGNORE_NULL :                        unset($this->_data["$key"]);                        break;                    case STATS_USE_NULL_AS_ZERO:                        if ($flag) {                            unset($this->_data["$key"]);                            $this->_data[0] += $v;                        } else {                            $this->_data[$key] = 0;                        }                        break;                    case STATS_REJECT_NULL :                    default:                        return PEAR::raiseError('data rejected, contains NULL values');                        break;                }            }        }        if ($flag) {            ksort($this->_data);            $this->_dataExpanded = array();            foreach ($this->_data as $val=>$freq) {                $this->_dataExpanded = array_pad($this->_dataExpanded, count($this->_dataExpanded) + $freq, $val);            }            sort($this->_dataExpanded);        } else {            sort($this->_data);        }        return true;    }/*}}}*/}/*}}}*/// vim: ts=4:sw=4:et:// vim6: fdl=1: fdm=marker:?>
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